HPC training workshops begin Monday, May 15

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series of training workshops in high performance computing will be held May 15, May 17 and May 24, 2017, presented by CSCAR in conjunction with Advanced Research Computing – Technology Services (ARC-TS). All sessions are held at East Hall, Room B254, 530 Church St.

Introduction to the Linux command Line
This course will familiarize the student with the basics of accessing and interacting with Linux computers using the GNU/Linux operating system’s Bash shell, also known as the “command line.”
• Monday, May 15, 9 a.m. – noon. (full descriptionregistration)

Introduction to the Flux cluster and batch computing
This workshop will provide a brief overview of the components of the Flux cluster, including the resource manager and scheduler, and will offer students hands-on experience.
• Wednesday, May 17, 1 – 4:30 p.m. (full description | registration)

Advanced batch computing on the Flux cluster
This course will cover advanced areas of cluster computing on the Flux cluster, including common parallel programming models, dependent and array scheduling, and a brief introduction to scientific computing with Python, among other topics.
• Wednesday, May 24, 1 – 5 p.m. (full description | registration)

NOTE: Additional workshops may be scheduled if demand warrants. Please sign up for the waiting list if the workshops are full, and you will be given first priority for any additional sessions.

ARC-TS contributes to successful fNIRS workshop

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The Center for Human Growth and Development (CHGD) held a workshop on functional near-infrared spectroscopy (fNIRS), a form of neuroimaging, with a special focus on pediatric applications. The workshop was sponsored by units at U-M, as well as units from Eastern Michigan University and Gallaudet University. It was attended by 50 people from as far away as Texas, and included research talks, instructional sessions, and hands-on experience with fNIRS data processing. The workshop was the first of its kind at U-M.

CHGD, ARC-TS, and LSA IT staff collaborated to provide a remote neuroimaging computing environment, which included a graphical interface, access to Matlab, and a suite of fNIRS software, that was accessed from participants’s laptops during the workshop. The attendees rated the practice exercises done via the computing environment one of the most important components of the workshop.

ARC-TS was pleased to be able to contribute to training in computational tools needed for emerging methods in neuroimaging. For more information about the fNIRS workshop, please see http://chgd.umich.edu/facilities-resources/developmental-neuroscience-laboratories/fnirs/fnirs-workshop/

New private insurance claims dataset and analytic support now available to health care researchers

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The Institute for Healthcare Policy and Innovation (IHPI) is partnering with Advanced Research Computing (ARC) to bring two commercial claims datasets to campus researchers.

The OptumInsight and Truven Marketscan datasets contain nearly complete insurance claims and other health data on tens of millions of people representing the US private insurance population. Within each dataset, records can be linked longitudinally for over 5 years.  

To begin working with the data, researchers should submit a brief analysis plan for review by IHPI staff, who will create extracts or grant access to primary data as appropriate.

CSCAR consultants are available to provide guidance on computational and analytic methods for a variety of research aims, including use of Flux and other UM computing infrastructure for working with these large and complex repositories.

Contact Patrick Brady (pgbrady@umich.edu) at IHPI or James Henderson (jbhender@umich.edu) at CSCAR for more information.

The data acquisition and availability was funded by IHPI and the U-M Data Science Initiative.