HPC 101 — High Performance Computing Workshop

Overview

This course will provide an overview of cluster computing in general and how to use the U-M Flux Cluster in particular. Topics to be covered include cluster computing concepts, common parallel programming models, introduction to the Flux Cluster; creating, submitting, observing, and analyzing cluster jobs; common pitfalls and how to avoid them; and some useful tools. We will issue you a temporary allocation to use for the course, or you can use your existing Flux allocations, if any. Short sample programs will be provided, or come to class with your own.

Prerequisites

HPC 100 or equivalent. This course assumes familiarity with the Linux command line.

A user account on Flux. If you do not have a Flux user account, click here to go to the account application page at: https://arc-ts.umich.edu/fluxform/

An activated MToken. You need to obtain an MToken and activate it. Visit Obtaining, Activating, and Using an MToken for instructions.

Instructor

Bennet Fauber
Scientific Applications Analyst
Advanced Research Computing — Technology Services

Bennet Fauber is a member of the technical team that administers the Flux cluster.

Materials

In-class handouts

Supplementary material

Course Preparation

In order to participate successfully in the class exercises, you must have a Flux user account, a Flux allocation, and an MToken. The user account allows you to log in to the cluster, create, compile, and test applications, and prepare Flux jobs for submission. The allocation allows you to submit those jobs, executing those applications in parallel on the cluster and charging their resource use against the allocation. A token is required to authenticate you to the cluster.

Flux user account

A single Flux user account can be used to prepare and submit jobs using various allocations. If you already already possess a user account, you can use it for this course, you can skip to “Flux allocation” below. If not, please visit https://arc-ts.umich.edu/fluxform to obtain one. A user account is free to members of the University community. Please note that obtaining an account requires human processing, so be sure to do this at least two business days before class begins.

Flux allocation

We’ll issue you a temporary allocation so you can run jobs on the cluster during the course. If you already have an existing Flux allocation, you can use that as well, if you like.

MToken

An MToken (hardware or software) is required to log in to the cluster. When logging in, you will need to give both the passcode it displays at time of login as well as your UMICH password in order to authenticate. If you already have an MToken, you can ignore the rest of this section.

If you need an MToken, follow the instructions at Obtaining, Activating, and Using an MToken.

Activate and test your MToken before you come to class.

Laptop Preparation

You do not need to bring your own laptop to class. The classroom contains Windows computers, which require your uniqname and UMICH password to login, and that have all necessary software pre-loaded.

If you want to use a laptop for the course, you are welcome to do so. However, if there are problems connecting your laptop, you will be asked to switch to the provided computer for the class. We will not stop to debug connection issues with personal or departmental laptops during the class. We will answer questions after class.

If you want to try to prepare your laptop for use in the class, please see our web page on Preparing your laptop to use Flux.

More help

Please use our class mailing list hpc101course@umich.edu for questions, comments, or to seek further assistance.