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mrfast | mrFAST is a read mapper that is designed to map short reads to reference genome
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mricron | Image viewer for NIfTI images and DICOM conversion
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mrsfast | mrsFAST is designed to map short reads to reference genome assemblies in a fast and memory-efficient manner.
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mrtrix | MRtrix provides a set of tools to perform various advanced diffusion MRI analyses.
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mummer | MUMmer is a system for rapidly aligning entire genomes, whether in complete or draft form.
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mummer4 | MUMmer is a system for rapidly aligning large DNA sequences to one another.
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murasaki | Murasaki produces anchors across genomes
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muscle | MUSCLE is one of the best-performing multiple alignment programs according to published benchmark tests, with accuracy and speed that are consistently better than CLUSTALW. MUSCLE can align hundreds of sequences in seconds. Most users learn everything they need to know about MUSCLE in a few minutes – only a handful of command-line options are needed to perform common alignment tasks.
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nagf95 | [SPECIAL LICENSE REQUIRED: contact hpc-support@umich.edu] NAGWARE – f95/f90 fortran compiler
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nanopolish | nanopolish is Signal-level algorithms for MinION data
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nastran-research | [SPECIAL LICENSE REQUIRED: contact hpc-support@umich.edu] Nastran is a multidisciplinary structural analysis application.
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ncbi-blast | Basic Local Alignment Search Tool (BLAST) is the most widely used sequence similarity tool.
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ncbi-blast+ | Basic Local Alignment Search Tool (BLAST) is the most widely used sequence similarity tool.
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ncbi-vdb | NGS is a new, domain-specific API for accessing reads, alignments and pileups produced from Next Generation Sequencing.
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ncl | NCAR command language for visualization.
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nco | The NCO toolkit manipulates and analyzes data stored in netCDF-accessible formats, including DAP, HDF4, and HDF5.
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ncview | Ncview is a visual browser for netCDF format files. Typically you would use ncview to get a quick and easy, push-button look at your netCDF files. You can view simple movies of the data, view along various dimensions, take a look at the actual data values, change color maps, invert the data, etc. It runs on UNIX platforms under X11, R4 or higher.
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netcdf | Libraries for creating and manipulating NetCDF files.
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netcdf-par | Libraries for creating and manipulating NetCDF files.
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netcdff-par | Libraries for creating and manipulating NetCDF files.
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networkx | NetworkX is a Python language software package for the creation, manipulation, and study of the structure, dynamics, and function of complex networks.
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networkx | NetworkX is a Python package for the creation, manipulation, and study of the structure, dynamics, and functions of complex networks.
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neuron | NEURON is a simulation environment for modeling individual neurons and networks of neurons.
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ngs-sdk | NGS is a new, domain-specific API for accessing reads, alignments and pileups produced from Next Generation Sequencing.
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ninja | Low-level build tool.
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nlopt | NLopt is a free/open-source library for nonlinear optimization, providing a common interface for a number of different free optimization routines available online as well as original implementations of various other algorithms.
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nodejs | Node.js is an asynchronous event driven JavaScript runtime.
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numpy-dev | Numerical libraries for use within Python.
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nwchem | NWChem aims to provide its users with computational chemistry tools that are scalable both in their ability to treat large scientific computational chemistry problems efficiently, and in their use of available parallel computing resources from high-performance parallel supercomputers to conventional workstation clusters.
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oclust | Pipeline for clustering long 16S rRNA sequencing reads, or any sequences, into Operational Taxonomic Units.
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octave | GNU Octave mathematics-oriented syntax with built-in plotting and visualization tools.
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oma | The OMA (“Orthologous MAtrix””) project is a method and database for the inference of orthologs among complete genomes.”
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openblas | BLAS provides standard interfaces for linear algebra, including BLAS1 (vector-vector operations), BLAS2 (matrix-vector operations), and BLAS3 (matrix-matrix operations).
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opencv | OpenCV (Open Source Computer Vision Library) is an open source computer vision and machine learning software library.
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opencv-python | This module sets up PYTHONPATH for python-anaconda to use OpenCV.
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openfoam | OpenFOAM is a free, open source CFD software.
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openmpi | OpenMPI implementation of the MPI protocol
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openmx | OpenMX is a nano-scale materal simulations package
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orange | Orange is a component-based data mining software. It includes a range of data visualization, exploration, preprocessing and modeling techniques.
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orca | An ab initio, DFT and semiempirical SCF-MO package
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Total pages: 13
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