VCFtools is a program package designed for working with VCF files, such as those generated by the 1000 Genomes Project. The aim of VCFtools is to provide easily accessible methods for working with complex genetic variation data in the form of VCF files.
Velvet is a de novo genomic assembler specially designed for short read sequencing technologies such as Solexa or 454.
The Variant Effect Predictor predicts the functional effects of genomic variants
VirSorter: mining viral signal from microbial genomic data
We have implemented a tool called VSEARCH which supports de novo and reference based chimera detection, clustering, full-length and prefix dereplication, reverse complementation, masking, all-vs-all pairwise global alignment, exact and global alignment searching, shuffling, subsampling and sorting. It also supports FASTQ file analysis, filtering and conversion.
a variant tool set that discovers short variants from Next Generation Sequencing data
Maximally-localised Wannier functions (MLWFs) and Wannier90
WCSTools is a package of programs and a library of utility subroutines for setting and using the world coordinate systems (WCS) in the headers of the most common astronomical image formats, FITS and IRAF .imh, to relate image pixels to sky coordinates.
WebLogo is a web based application designed to make the generation of sequence logos as easy and painless as possible.
Celera Assembler is a de novo whole-genome shotgun (WGS) DNA sequence assembler.
The wigToBigWig program converts a ‘wig’ file to ‘bigWig’ format.
Wise2 includes genewise, a program for aligning proteins or protein HMMs to DNA, and dynamite a rather cranky “macro language”” which automates the production of dynamic programming. “
The Weather Research and Forecasting (WRF) Model is atmospheric modeling system designed for both meteorological research and numerical weather prediction.
XCrySDen is a molecular/crystal structure visualization program.
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