RAxML (Randomized Axelerated Maximum Likelihood)
Multipurpose programming language
This package implements several methods to infer divergence times on a molecular
Rate4Site is a program for detecting conserved amino-acid sites
RAiSD: Software for selective sweep detection.
QIIME. (canonically pronounced chime) stands for Quantitative Insights Into Microbial Ecology.
Assembly and analysis of RADseq data sets
A quality control tool designed for DNA sequencing data
R libraries for bioinformatics, genomics, and sequencing.
Pilon is a software tool which can be used to: Automatically improve draft assemblies, Find variation among strains, including large event detection
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